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The Flux Project

The Flux Project is a bioinformatics approach to understand high-throughput sequencing applied to the transcriptome (RNA-Seq). The project comprises a deterministic simulation pipeline, called the Flux Simulator, that models in silico the steps that determine amount and distribution of reads observed in an RNA-Seq experiment. Another program, known as the Flux Capacitor, aims at the deconvolution of such reads in order to determine the abundances of every transcript species in a cell.

Resources

The software company Atlassian provided the Flux Project with an Open Software License for their products



JIRA Tracker

JIRA Tracker

   Confluence Wiki

Confluence Wiki

   Fisheye Browser

Fisheye Browser

JIRA is an issue tracking system to document the progress on known program errors (bugs) and enhancements. Use this system to browse known issues or to file new reports, and to monitor the development progress. The JIRA tracker provides a general RSS activity stream

 

Confluence provides a powerful platform for wiki systems for documentation, discussions in forums and as page comments, and community building. Also the Confluence system broadcasts all updates in form of an RSS stream, but users are required to register and to log in in order to read the contents.

  

Fisheye manages code repositories and provides graphical help to browse and to compare source code snippets, as well as aid in tracking multiple simultaneous code fragments committed in parallel branches. Events in the Fisheye Browser can be downloaded in form of an RSS feed.